- Ateneo Center for Organization Research and Development
- Ateneo de Manila University
- Higher Education
- Ateneo Graduate School of Business
- Ateneo School of Government
- Ateneo School of Law
- Ateneo School of Medicine and Public Health
- Gokongwei Brothers School of Education and Learning Design
- Ateneo Institute for the Science and Art of Learning and Teaching
- Ateneo Teacher Center
- Department of Catholic Education Philosophy and Practice
- Department of Curriculum, Peadagogy, and Assessment
- Department of Educational Leadership and Management
- Ignatian Initiative for Teacher Excellence
- Lily Gokongwei Ngochua Leadership Academy
- Pathways for Higher Education
- John Gokongwei School of Management
- Ateneo Center for Social Entrepreneurship
- Ateneo Family Business Development Center
- Business Insights Laboratory for Development
- Business Resource Center
- Department of Finance and Accounting
- Department of Leadership and Strategy
- Department of Marketing and Law
- Department of Quantitative Methods and Information Technology
- School of Humanities
- Ateneo Center for English Language Teaching
- Ateneo Language Learning Center
- Department of English
- Department of Filipino
- Department of Fine Arts
- Department of Interdisciplinary Studies
- Department of Modern Languages
- Department of Philosophy
- Department of Physical Education
- Department of Theology
- Literary and Cultural Studies Program
- School of Science and Engineering
- Ateneo Center for Computing Competency and Research
- Ateneo Innovation Center
- Ateneo Research Institute of Science and Engineering
- Department of Biology
- Department of Chemistry
- Department of Electronics, Computer, and Communications Engineering
- Department of Environmental Science
- Department of Information Systems and Computer Science
- Department of Mathematics
- Department of Physics
- Health Sciences Program
- National Chemistry Instrumentation Center
- School of Social Sciences
- Asian Center for Journalism
- Ateneo Center for Asian Studies
- Ateneo Center for Economic Research and Development
- Chinese Studies Program
- Department of Communication
- Department of Development Studies
- Department of Economics
- Department of History
- Department of Political Science
- Department of Psychology
- Department of Sociology and Anthropology
- Eugenio Lopez Jr. Center for Multimedia Communication
- European Studies Program
- Fr Jaime C Bulatao SJ Center for Psychology Services
- Institute of Philippine Culture
- Japanese Studies Program
- Korean Studies Program
- Ricardo Leong Center for Chinese Studies
- Office of the Vice President for Human Resources, Management, and Organization Development